This is the repository for the R-package of the gen3sis engine.
gen3sis is a spatially-explicit eco-evolutionary mechanistic model with a modular implementation. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes.
gen3sis is licensed under a GPLv3 License deriving from ETHZ 2020 <doi.org/10.5905/ethz-1007-251> and has package authorship according to: http://epub.wu.ac.at/3269/1/Report114.pdf
gen3sis is avabaile on CRAN. You can install the latest CRAN release via
you can also install the latest development release from GitHub via
devtools::install_github(repo = "project-gen3sis/R-package/", dependencies = TRUE, build_vignettes = TRUE)
Below the status of the automatic Travis CI tests on the master branch
Load and run a simulation with the desired config and landscapes. Exemple data is provided with the package
library("gen3sis") datapath <- system.file(file.path("extdata", "WorldCenter"), package = "gen3sis") sim <- run_simulation(config = file.path(datapath, "config/config_worldcenter.R"), landscape = file.path(datapath, "landscape"), output_directory = tempdir(), verbose=0)
A summary statistics is stored at ‘sim’ more data can be save using the oberver function
Plot the summary statistics of a simulation
Make sure you have the latest gen3sis version
#print package version paste("gen3sis version:", packageVersion("gen3sis"))